Methods for genomics data analysis

Materials from class on Monday, March 15, 2021

Code examples

batch_sva_combat.R - “Batch effects and confounders”, by Jeff Leek, Source

adjusting_with_linear_models.Rmd - another batch removal demo, Source, with added limma::removeBatchEffect, see paper for data details

heatmaps.R - demo of scatterplots and heatmaps

permutations.R - permutation test

Last updated on March 17, 2021

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