Genomic technologies
References
Milestones in Genomic Sequencing by Nature, 2000-2021 period, interactive infographics
Claussnitzer, Melina, Judy H. Cho, Rory Collins, Nancy J. Cox, Emmanouil T. Dermitzakis, Matthew E. Hurles, Sekar Kathiresan, et al. “A Brief History of Human Disease Genetics.” Nature, (January 2020) - Timeline and milestones in genomics development focusing on disease genetics.
Hagen, J. B. “The Origins of Bioinformatics.” Nature Reviews. Genetics, (01 December 2000)
The (near) complete sequence of a human genome - efforts for completing human genome assembly
Mardis, Elaine R. “DNA Sequencing Technologies: 2006-2016.” Nature Protocols, (February 2017) - DNA sequencing technologies introduction, references.
Heather, James M., and Benjamin Chain. “The Sequence of Sequencers: The History of Sequencing DNA.” Genomics, (January 2016) - Review of sequencing technologies, from pre-Sanger to current PacBio, Oxford Nanopore, Ion Torrent.
Goodwin, Sara, John D. McPherson, and W. Richard McCombie. “Coming of Age: Ten Years of next-Generation Sequencing Technologies.” Nature Reviews. Genetics, (17 2016) - From microarrays to long read sequencing, single-cell sequencing. Technology review. Table with all technologies and costs. Figures.
Green, Eric D., Mark S. Guyer, Eric D. Green, Mark S. Guyer, Teri A. Manolio, and Jane L. Peterson. “Charting a Course for Genomic Medicine from Base Pairs to Bedside.” Nature, (February 10, 2011) - Perspective on genomics development, technologies. Figure 1 - pictorial roadmap
Mardis, Elaine R. “Next-Generation DNA Sequencing Methods.” Annual Review of Genomics and Human Genetics, (2008) - Sequencing technologies review. DNA-/RNA-/ChIP-seq. Figures.
E. S. Lander et al., “Initial Sequencing and Analysis of the Human Genome,” Nature, (February 15, 2001) - Genome sequencing landmark paper.
Genomics resources
SequencEnG - An interactive learning resource for next-generation sequencing (NGS) techniques. Each technology had the corresponding reference and infographics.
Links and references to many resources by Ming Tang
Bioinformatics-Resources - A curated list of resources for learning bioinformatics.
biotools - A massive collection of references on the topics of bioinformatics, sequencing technologies, programming, machine learning, and more.
Computational genomics with R book by Altuna Akalin. GitHub repo