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Cancer Bioinformatics
Cancer Bioinformatics
  • Syllabus
  • Schedule
  • Readings
  • Classes
Class sessions
  • Biology Intro
  • Unix/Linux
  • Genomic technologies
  • Genomic resources
  • Alignment algorithms
  • Bioconductor
  • RNA-seq
  • Methods for genomics data analysis
  • Functional enrichment analysis
  • Clustering
  • Epigenomics, methylation
  • ChIP=seq
  • scRNA-seq
  • Metagenomics
  • Genomic variation
  • Hi-C
  • Final project

Clustering

Materials from class on Friday, March 26, 2021

Slides

Hierarchial clustering

Lecture slides in HTML format

Average_linkage.R, Single_Linkage.R, Complete_Linkage.R, Divisive_Kmeans.R, CramersV_gower.R

Dimensionality reduction

Lecture slides in HTML format

Kmeans_PAM.R (Data), PCA.R (Data), MDS.Rmd

Clustering QC

Lecture slides in HTML format

Last updated on March 31, 2021

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BIOS 691: Cancer Bioinformatics (Spring 2021)
Virginia Commonwealth University    Biostatistics Graduate Program

Dr. Mikhail Dozmorov    mdozmorov@vcu.edu

Monday, Wednesday    9:00am – 10:20sm
Online

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Content 2021 MGD

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